PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF171300020CFD_t1
Common NameTRAES_3BF171300020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 574aa    MW: 63964.1 Da    PI: 9.2604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF171300020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75e-14371161296
                              HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                       B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++ + +p+kf++++ggk   s+t+ le+ +g  ++v++  +k  +++vl+ +GW+ Fv+a+ ++e+D+++F ++++s f   v v
  TRAES3BF171300020CFD_t1  37 FRHGMAIPNKFIDHFGGK--ISRTIELESHNGSMYTVEV--SKLMNETVLRrRGWEAFVNAHSIEENDSLLFPHIEKSLF--EVLV 116
                              4566********888988..888****************..888888777659********************9987877..4444 PP

2B345.51.4e-14268357895
                              -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
                       B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.se 89 
                              +++++ +  v+pk faeeh   ++es+ ltl+   ++++W   + +rk+++++vlt + W +F ++ng++egD +vF+ + g+ ++
  TRAES3BF171300020CFD_t1 268 KMNTRIHTTVIPKLFAEEHF--PRESQNLTLQRpGKSKKWHPWFYIRKSQCGHVLTgSRWVGFLRDNGVQEGDLCVFQPVkGTgTR 351
                              566677889**********8..457778***995566****999779999999998678*******************55254455 PP

                              E..EEE CS
                       B3  90 felvvk 95 
                               +++v+
  TRAES3BF171300020CFD_t1 352 SKFTVH 357
                              555555 PP

3B344.72.5e-144875681699
                              EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS
                       B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 
                              ++++  +a+e+ +++ e + +tl  ++ + Wev++  r ++g+  l+ GW++F+++n+L++ D+++F+ ++++ ++ +++v+++r+
  TRAES3BF171300020CFD_t1 487 VSISCAYAAEY-LPPGERVAVTLV-RRKKAWEVEM--RARGGGRALAHGWRGFARDNRLRVQDVCLFQpMEKNhESLTMTVHIVRH 568
                              47777788888.455555566655.589*******..77777777***********************5558889********997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1922122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.3E-1825121IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.29326120IPR003340B3 DNA binding domain
CDDcd100174.56E-1627118No hitNo description
SMARTSM010198.0E-1029120IPR003340B3 DNA binding domain
PfamPF023622.7E-1237114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-17256359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-15259358IPR015300DNA-binding pseudobarrel domain
CDDcd100171.75E-16261359No hitNo description
PROSITE profilePS5086310.884261362IPR003340B3 DNA binding domain
SMARTSM010197.0E-5263362IPR003340B3 DNA binding domain
PfamPF023624.8E-13264358IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-15463569IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-16467567No hitNo description
Gene3DG3DSA:2.40.330.101.5E-17467570IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.4E-5469569IPR003340B3 DNA binding domain
PfamPF023622.0E-12473568IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546513569IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MAGLASQMKR SCDCCKRYAD HLDGRMKCFC RRMTANFRHG MAIPNKFIDH FGGKISRTIE  60
LESHNGSMYT VEVSKLMNET VLRRRGWEAF VNAHSIEEND SLLFPHIEKS LFEVLVLDSD  120
DCEKVLPSAG IKVASCNVQE SSSVDYIDIS SSVGYIDISS SSGDDTTRSP GSKRFATCER  180
GDSSHPRKTA VNDSSSEEDS GEDSDAKAEE HSEDESSFGL DDVRQTPCTG RDYVLSLNAR  240
LSGAQEERVT RLLQAVRAKT PVFVAIMKMN TRIHTTVIPK LFAEEHFPRE SQNLTLQRPG  300
KSKKWHPWFY IRKSQCGHVL TGSRWVGFLR DNGVQEGDLC VFQPVKGTGT RSKFTVHLLH  360
EPLGANGSTG PKKRVGNTRV NSAAPERSTT AHGHGATTMA KAAPHPDAPT TLRVNKEQDD  420
GCNHGRQQAR QHPKPARPYV LSSTARLTEE QEREVDRTAR AIGSWVPAYV SVMNRSSVGV  480
GNRIYNVSIS CAYAAEYLPP GERVAVTLVR RKKAWEVEMR ARGGGRALAH GWRGFARDNR  540
LRVQDVCLFQ PMEKNHESLT MTVHIVRHSG KRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232555.10.0PREDICTED: B3 domain-containing protein Os03g0620400-like
TrEMBLA0A077RQW70.0A0A077RQW7_WHEAT; Uncharacterized protein
STRINGBRADI1G14530.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-13B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]